Einzeltreffer — DigiBib

Pseudomonas baetica strain a390T is the type strain of this recently described species and here we present its high-contiguity draft genome. To celebrate the 16th International Conference on Pseudomonas, the genome of P. baetica strain a390T was sequenced using a unique combination of Ion Torrent semiconductor and Oxford Nanopore methods as part of a collaborative community-led project. The use of high-quality Ion Torrent sequences with long Nanopore reads gave rapid, high-contiguity and -quality, 16-contig genome sequence. Whole genome phylogenetic analysis places P. baetica within the P. koreensis clade of the P. fluorescens group. Comparison of the main genomic features of P. baetica with a variety of other Pseudomonas spp. suggests that it is a highly adaptable organism, typical of the genus. This strain was originally isolated from the liver of a diseased wedge sole fish, and genotypic and phenotypic analyses show that it is tolerant to osmotic stress and to oxytetracycline.

Titel:	Community-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies.
Autor/in / Beteiligte Person:	Beaton, A ; Lood, C ; Cunningham-Oakes, E ; MacFadyen, A ; Mullins, AJ ; Bestawy, WE ; Botelho, J ; Chevalier, S ; Coleman, S ; Dalzell, C ; Dolan, SK ; Faccenda, A ; Ghequire, MGK ; Higgins, S ; Kutschera, A ; Murray, J ; Redway, M ; Salih, T ; da Silva AC ; Smith, BA ; Smits, N ; Thomson, R ; Woodcock, S ; Welch, M ; Cornelis, P ; Lavigne, R ; van Noort V ; Tucker, NP
Zeitschrift:	FEMS microbiology letters, Jg. 365 (2018-05-01), Heft 9
Veröffentlichung:	2015- : Oxford Oxford University Press ; <i>Original Publication</i>: Amsterdam, Published by Elsevier/North Holland on behalf of the Federation of European Microbiological Societies., 2018
Medientyp:	academicJournal
ISSN:	1574-6968 (electronic)
DOI:	10.1093/femsle/fny069
Schlagwort:	Animals Genome, Bacterial Genomics instrumentation Nanopores Phenotype Phylogeny Pseudomonas classification Pseudomonas isolation & purification Pseudomonas Infections microbiology Semiconductors Sequence Analysis, DNA instrumentation Fish Diseases microbiology Genomics methods Pseudomonas genetics Pseudomonas Infections veterinary Sequence Analysis, DNA methods
Sonstiges:	Nachgewiesen in: MEDLINE Sprachen: English Publication Type: Journal Article; Research Support, Non-U.S. Gov't Language: English [FEMS Microbiol Lett] 2018 May 01; Vol. 365 (9). MeSH Terms: Fish Diseases / microbiology ; Genomics / methods ; Pseudomonas / genetics ; Pseudomonas Infections / veterinary ; Sequence Analysis, DNA / *methods ; Animals ; Genome, Bacterial ; Genomics / instrumentation ; Nanopores ; Phenotype ; Phylogeny ; Pseudomonas / classification ; Pseudomonas / isolation & purification ; Pseudomonas Infections / microbiology ; Semiconductors ; Sequence Analysis, DNA / instrumentation References: Microb Genom. 2016 Sep 20;2(9):e000086. (PMID: 28785418) ; PLoS One. 2011;6(9):e24310. (PMID: 21957445) ; Genome Res. 2017 May;27(5):737-746. (PMID: 28100585) ; Nat Commun. 2017 Sep 4;8(1):414. (PMID: 28871205) ; PLoS Pathog. 2013 Mar;9(3):e1003217. (PMID: 23505373) ; BMC Genomics. 2012 May 23;13:202. (PMID: 22621371) ; Front Microbiol. 2011 Apr 05;2:65. (PMID: 21747788) ; Nat Chem Biol. 2012 Aug;8(8):731-6. (PMID: 22772152) ; PLoS Biol. 2012 Jan;10(1):e1001242. (PMID: 22272184) ; PLoS Comput Biol. 2017 Jul 17;13(7):e1005652. (PMID: 28715501) ; Bioinformatics. 2014 Jul 15;30(14):2068-9. (PMID: 24642063) ; FEMS Microbiol Lett. 2017 Feb 1;364(3):. (PMID: 28011698) ; Nucleic Acids Res. 2016 Jul 8;44(W1):W16-21. (PMID: 27141966) ; PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. (PMID: 28594827) ; Science. 2003 Aug 1;301(5633):616-20. (PMID: 12893936) ; Microbiology. 2011 Jun;157(Pt 6):1565-72. (PMID: 21474533) ; Biochemistry. 2015 Sep 29;54(38):5937-48. (PMID: 26352800) ; Microbiology. 2000 Jan;146 ( Pt 1):199-208. (PMID: 10658666) ; Front Microbiol. 2015 Mar 18;6:214. (PMID: 26074881) ; Trends Microbiol. 2015 Oct;23 (10 ):587-590. (PMID: 26433692) ; Bioinformatics. 2016 Mar 15;32(6):929-31. (PMID: 26576653) ; J Bacteriol. 1998 Jun;180(11):2987-91. (PMID: 9603892) ; PLoS One. 2014 Nov 19;9(11):e112963. (PMID: 25409509) ; Trends Microbiol. 2003 May;11(5):195-200. (PMID: 12781517) ; J Bacteriol. 2003 Jul;185(13):3863-70. (PMID: 12813080) ; MBio. 2015 May 05;6(3):e00285-15. (PMID: 25944858) ; Int J Syst Evol Microbiol. 2015 Feb;65(Pt 2):625-32. (PMID: 25410940) ; Nucleic Acids Res. 2017 Jul 3;45(W1):W36-W41. (PMID: 28460038) ; Bioinformatics. 2015 Oct 15;31(20):3350-2. (PMID: 26099265) ; Genome Announc. 2017 Jan 26;5(4):. (PMID: 28126949) ; Nat Rev Microbiol. 2009 Sep;7(9):654-65. (PMID: 19680249) ; J Mol Biol. 2008 May 9;378(4):828-39. (PMID: 18395745) ; J Bacteriol. 2009 Nov;191(22):6968-74. (PMID: 19734311) ; Nat Commun. 2015 Jan 16;6:5945. (PMID: 25592773) ; Mol Microbiol. 2007 Aug;65(4):857-75. (PMID: 17627767) ; Biol Direct. 2012 Jun 25;7:18. (PMID: 22731697) ; Front Microbiol. 2017 May 19;8:914. (PMID: 28579984) ; J Bacteriol. 2011 Jun;193(11):2767-75. (PMID: 21441525) ; Chem Biol. 2013 Apr 18;20(4):487-93. (PMID: 23601637) ; Biometals. 2009 Feb;22(1):15-22. (PMID: 19130263) ; Genome Biol. 2016 Jun 20;17 (1):132. (PMID: 27323842) ; Biochimie. 2002 May-Jun;84(5-6):499-510. (PMID: 12423794) ; Ann N Y Acad Sci. 1974 May 10;235(0):364-86. (PMID: 4605290) ; Bioinformatics. 2013 Apr 15;29(8):1072-5. (PMID: 23422339) ; Nucleic Acids Res. 2017 Jul 3;45(W1):W30-W35. (PMID: 28472413) ; Sci Rep. 2016 Jul 05;6:29043. (PMID: 27378055) ; FEBS Lett. 2016 Jan;590(2):224-31. (PMID: 26823169) ; PLoS One. 2015 Jul 06;10(7):e0131112. (PMID: 26147218) ; Front Microbiol. 2011 Jul 13;2:150. (PMID: 21808635) ; Environ Pollut. 2017 Jan;220(Pt A):644-649. (PMID: 27769773) ; J Endotoxin Res. 2006;12(6):324-36. (PMID: 17254386) ; FEMS Microbiol Rev. 2014 Jul;38(4):523-68. (PMID: 24923764) ; Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2338-45. (PMID: 24744015) ; Vet Microbiol. 2013 Apr 12;163(1-2):190-5. (PMID: 23357049) ; Antimicrob Agents Chemother. 2011 Dec;55(12):5676-84. (PMID: 21911574) ; J Comput Biol. 2012 May;19(5):455-77. (PMID: 22506599) ; Int J Food Microbiol. 2017 Jan 2;240:63-74. (PMID: 27377009) ; FEMS Microbiol Rev. 2017 Sep 1;41(5):698-722. (PMID: 28981745) ; Structure. 2015 Dec 1;23 (12 ):2234-2245. (PMID: 26655471) ; Int J Syst Evol Microbiol. 2012 Apr;62(Pt 4):874-82. (PMID: 21642488) ; Pathog Dis. 2015 Nov;73(8):ftv053. (PMID: 26223882) ; Microbiology. 2008 Jul;154(Pt 7):2070-83. (PMID: 18599835) ; Environ Microbiol. 2010 Jun;12(6):1486-97. (PMID: 20192963) ; Antimicrob Agents Chemother. 2003 Mar;47(3):883-8. (PMID: 12604516) ; Res Microbiol. 2017 Oct;168(8):760-772. (PMID: 28851671) ; Nature. 2016 Dec 29;541(7635):123-124. (PMID: 28054618) ; Front Microbiol. 2011 Jun 01;2:118. (PMID: 21687428) ; Appl Environ Microbiol. 2017 Jul 17;83(15):. (PMID: 28526791) ; Clin Microbiol Infect. 2000 Sep;6(9):509-15. (PMID: 11168187) Grant Information: BB/K019600/1 United Kingdom Biotechnology and Biological Sciences Research Council; TCS/16/24 United Kingdom Chief Scientist Office Entry Date(s): Date Created: 20180327 Date Completed: 20190905 Latest Revision: 20190906 Update Code: 20240513 PubMed Central ID: PMC5909648

Klicken Sie ein Format an und speichern Sie dann die Daten oder geben Sie eine Empfänger-Adresse ein und lassen Sie sich per Email zusenden.

BibTeX Citavi, JabRef, u.a.
(Literaturverwaltung)

PDF kein Volltext!
(Merkzettel, Notizen)

RIS Endnote, Citavi u.a.
(Literaturverwaltung)

MODS
(XML zur Weiterverarbeitung)

oder

Wählen Sie das für Sie passende Zitationsformat und kopieren Sie es dann in die Zwischenablage, lassen es sich per Mail zusenden oder speichern es als PDF-Datei.

Gewünschter Zitations-Stil:

oder

Bitte prüfen Sie, ob die Zitation formal korrekt ist, bevor Sie sie in einer Arbeit verwenden. Benutzen Sie gegebenenfalls den "Exportieren"-Dialog, wenn Sie ein Literaturverwaltungsprogramm verwenden und die Zitat-Angaben selbst formatieren wollen.

Community-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies.