| Sonstiges: |
- Nachgewiesen in: MEDLINE
- Sprachen: English
- Publication Type: Journal Article
- Language: English
- [Arch Virol] 2021 Aug; Vol. 166 (8), pp. 2255-2261. <i>Date of Electronic Publication: </i>2021 May 18.
- MeSH Terms: Amino Acid Substitution* ; Classical Swine Fever / *virology ; Classical Swine Fever Virus / *classification ; Viral Envelope Proteins / *genetics ; Amino Acid Sequence ; Animals ; China ; Classical Swine Fever Virus / genetics ; Classical Swine Fever Virus / isolation & purification ; Evolution, Molecular ; Genotype ; Phylogeny ; Reverse Transcriptase Polymerase Chain Reaction ; Sequence Alignment ; Swine
- References: Blome S, Staubach C, Henke J, Carlson J, Beer M (2017) Classical swine fever—an updated review. Viruses 9:4. https://doi.org/10.3390/v9040086. (PMID: 10.3390/v9040086) ; Edwards S, Fukusho A, Lefevre PC, Lipowski A, Pejsak Z, Roehe P, Westergaard J (2000) Classical swine fever: the global situation. Vet Microbiol 73(2–3):103–119. https://doi.org/10.1016/s0378-1135(00)00138-3. (PMID: 10.1016/s0378-1135(00)00138-310785321) ; Moennig V (2000) Introduction to classical swine fever: virus, disease and control policy. Vet Microbiol 73(2–3):93–102. https://doi.org/10.1016/s0378-1135(00)00137-1. (PMID: 10.1016/s0378-1135(00)00137-110785320) ; Meyers G, Rumenapf T, Thiel HJ (1989) Molecular cloning and nucleotide sequence of the genome of hog cholera virus. Virology 171(2):555–567. https://doi.org/10.1016/0042-6822(89)90625-9. (PMID: 10.1016/0042-6822(89)90625-92763466) ; Thiel HJ, Stark R, Weiland E, Rumenapf T, Meyers G (1991) Hog cholera virus: molecular composition of virions from a pestivirus. J Virol 65(9):4705–4712. (PMID: 10.1128/jvi.65.9.4705-4712.19911870198248926) ; Yona S, Kim KW, Wolf Y, Mildner A, Varol D, Breker M, Strauss-Ayali D, Viukov S, Guilliams M, Misharin A, Hume DA, Perlman H, Malissen B, Zelzer E, Jung S (2013) Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis. Immunity 38(1):79–91. https://doi.org/10.1016/j.immuni.2012.12.001. (PMID: 10.1016/j.immuni.2012.12.00123273845) ; He F, Ling L, Liao Y, Li S, Han W, Zhao B, Sun Y, Qiu HJ (2014) Beta-actin interacts with the E2 protein and is involved in the early replication of classical swine fever virus. Virus Res 179:161–168. https://doi.org/10.1016/j.virusres.2013.10.016. (PMID: 10.1016/j.virusres.2013.10.01624184320) ; Vuono EA, Ramirez-Medina E, Berggren K, Rai A, Pruitt S, Silva E, Velazquez-Salinas L, Gladue DP, Borca MV (2020) Swine host protein coiled-coil domain-containing 115 (CCDC115) interacts with classical swine fever virus structural glycoprotein E2 during virus replication. Viruses 12:4. https://doi.org/10.3390/v12040388. (PMID: 10.3390/v12040388) ; Yang Z, Shi Z, Guo H, Qu H, Zhang Y, Tu C (2015) Annexin 2 is a host protein binding to classical swine fever virus E2 glycoprotein and promoting viral growth in PK-15 cells. Virus Res 201:16–23. https://doi.org/10.1016/j.virusres.2015.02.013. (PMID: 10.1016/j.virusres.2015.02.01325701745) ; Risatti GR, Borca MV, Kutish GF, Lu Z, Holinka LG, French RA, Tulman ER, Rock DL (2005) The E2 glycoprotein of classical swine fever virus is a virulence determinant in swine. J Virol 79(6):3787–3796. https://doi.org/10.1128/JVI.79.6.3787-3796.2005. (PMID: 10.1128/JVI.79.6.3787-3796.2005157312721075681) ; Weiland E, Ahl R, Stark R, Weiland F, Thiel HJ (1992) A second envelope glycoprotein mediates neutralization of a pestivirus, hog cholera virus. J Virol 66(6):3677–3682. (PMID: 10.1128/jvi.66.6.3677-3682.19921583727241151) ; Paton DJ, McGoldrick A, Greiser-Wilke I, Parchariyanon S, Song JY, Liou PP, Stadejek T, Lowings JP, Bjorklund H, Belak S (2000) Genetic typing of classical swine fever virus. Vet Microbiol 73(2–3):137–157. https://doi.org/10.1016/s0378-1135(00)00141-3. (PMID: 10.1016/s0378-1135(00)00141-310785324) ; Deng MC, Huang CC, Huang TS, Chang CY, Lin YJ, Chien MS, Jong MH (2005) Phylogenetic analysis of classical swine fever virus isolated from Taiwan. Vet Microbiol 106(3–4):187–193. https://doi.org/10.1016/j.vetmic.2004.12.014. (PMID: 10.1016/j.vetmic.2004.12.01415778024) ; Postel A, Schmeiser S, Perera CL, Rodriguez LJ, Frias-Lepoureau MT, Becher P (2013) Classical swine fever virus isolates from Cuba form a new subgenotype 1.4. Vet Microbiol 161(3–4):334–338. https://doi.org/10.1016/j.vetmic.2012.07.045. (PMID: 10.1016/j.vetmic.2012.07.04522902191) ; Lowings P, Ibata G, Needham J, Paton D (1996) Classical swine fever virus diversity and evolution. J Gen Virol 77(Pt 6):1311–1321. https://doi.org/10.1099/0022-1317-77-6-1311. (PMID: 10.1099/0022-1317-77-6-13118683221) ; Leifer I, Hoeper D, Blome S, Beer M, Ruggli N (2011) Clustering of classical swine fever virus isolates by codon pair bias. BMC Res Notes 4:521. https://doi.org/10.1186/1756-0500-4-521. (PMID: 10.1186/1756-0500-4-521221262543341591) ; Beer M, Goller KV, Staubach C, Blome S (2015) Genetic variability and distribution of Classical swine fever virus. Anim Health Res Rev 16(1):33–39. https://doi.org/10.1017/S1466252315000109. (PMID: 10.1017/S146625231500010926050570) ; Tu C, Lu Z, Li H, Yu X, Liu X, Li Y, Zhang H, Yin Z (2001) Phylogenetic comparison of classical swine fever virus in China. Virus Res 81(1–2):29–37. https://doi.org/10.1016/s0168-1702(01)00366-5. (PMID: 10.1016/s0168-1702(01)00366-511682122) ; Choe S, Le VP, Shin J, Kim JH, Kim KS, Song S, Cha RM, Park GN, Nguyen TL, Hyun BH, Park BK, An DJ (2020) Pathogenicity and genetic characterization of Vietnamese classical swine fever virus: 2014–2018. Pathogens 9:3. https://doi.org/10.3390/pathogens9030169. (PMID: 10.3390/pathogens9030169) ; Postel A, Schmeiser S, Bernau J, Meindl-Boehmer A, Pridotkas G, Dirbakova Z, Mojzis M, Becher P (2012) Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences. Vet Res 43:50. https://doi.org/10.1186/1297-9716-43-50. (PMID: 10.1186/1297-9716-43-50226762463403906) ; Rios L, Coronado L, Naranjo-Feliciano D, Martinez-Perez O, Perera CL, Hernandez-Alvarez L, Diaz de Arce H, Nunez JI, Ganges L, Perez LJ (2017) Deciphering the emergence, genetic diversity and evolution of classical swine fever virus. Sci Rep 7(1):17887. https://doi.org/10.1038/s41598-017-18196-y. (PMID: 10.1038/s41598-017-18196-y292634285738429) ; Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol 1(1):vev003. https://doi.org/10.1093/ve/vev003. (PMID: 10.1093/ve/vev003277742775014473) ; Postel A, Schmeiser S, Oguzoglu TC, Indenbirken D, Alawi M, Fischer N, Grundhoff A, Becher P (2015) Close relationship of ruminant pestiviruses and classical Swine Fever virus. Emerg Infect Dis 21(4):668–672. https://doi.org/10.3201/eid2104.141441. (PMID: 10.3201/eid2104.141441258116834378490) ; Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30(4):772–780. https://doi.org/10.1093/molbev/mst010. (PMID: 10.1093/molbev/mst010233296903603318) ; Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35(6):1547–1549. https://doi.org/10.1093/molbev/msy096. (PMID: 10.1093/molbev/msy096297228875967553) ; Zhang D, Gao F, Jakovlic I, Zou H, Zhang J, Li WX, Wang GT (2020) PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour 20(1):348–355. https://doi.org/10.1111/1755-0998.13096. (PMID: 10.1111/1755-0998.1309631599058) ; Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods 14(6):587–589. https://doi.org/10.1038/nmeth.4285. (PMID: 10.1038/nmeth.4285284813635453245) ; Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 32(1):268–274. https://doi.org/10.1093/molbev/msu300. (PMID: 10.1093/molbev/msu30025371430) ; Minh BQ, Nguyen MA, von Haeseler A (2013) Ultrafast approximation for phylogenetic bootstrap. Mol Biol Evol 30(5):1188–1195. https://doi.org/10.1093/molbev/mst024. (PMID: 10.1093/molbev/mst024234183973670741) ; Letunic I, Bork P (2019) Interactive tree of life (iTOL) v4: recent updates and new developments. Nucleic Acids Res 47(W1):W256–W259. https://doi.org/10.1093/nar/gkz239. (PMID: 10.1093/nar/gkz239309314756602468) ; Rios L, Nunez JI, Diaz de Arce H, Ganges L, Perez LJ (2018) Revisiting the genetic diversity of classical swine fever virus: a proposal for new genotyping and subgenotyping schemes of classification. Transbound Emerg Dis 65(4):963–971. https://doi.org/10.1111/tbed.12909. (PMID: 10.1111/tbed.1290929799671) ; Zhang H, Leng C, Feng L, Zhai H, Chen J, Liu C, Bai Y, Ye C, Peng J, An T, Kan Y, Cai X, Tian Z, Tong G (2015) A new subgenotype 2.1d isolates of classical swine fever virus in China, 2014. Infect Genet Evol 34:94–105. https://doi.org/10.1016/j.meegid.2015.05.031. (PMID: 10.1016/j.meegid.2015.05.03126031602) ; Luo Y, Li S, Sun Y, Qiu HJ (2014) Classical swine fever in China: a minireview. Vet Microbiol 172(1–2):1–6. https://doi.org/10.1016/j.vetmic.2014.04.004. (PMID: 10.1016/j.vetmic.2014.04.00424793098) ; Luo Y, Ji S, Liu Y, Lei JL, Xia SL, Wang Y, Du ML, Shao L, Meng XY, Zhou M, Sun Y, Qiu HJ (2017) Isolation and characterization of a moderately virulent classical swine fever virus emerging in China. Transbound Emerg Dis 64(6):1848–1857. https://doi.org/10.1111/tbed.12581. (PMID: 10.1111/tbed.1258127658930) ; Gong W, Wu J, Lu Z, Zhang L, Qin S, Chen F, Peng Z, Wang Q, Ma L, Bai A, Guo H, Shi J, Tu C (2016) Genetic diversity of subgenotype 2.1 isolates of classical swine fever virus. Infect Genet Evol 41:218–226. https://doi.org/10.1016/j.meegid.2016.04.002. (PMID: 10.1016/j.meegid.2016.04.00227085291) ; Gong W, Li J, Wang Z, Sun J, Mi S, Lu Z, Cao J, Dou Z, Sun Y, Wang P, Yuan K, Zhang L, Zhou X, He S, Tu C (2019) Virulence evaluation of classical swine fever virus subgenotype 2.1 and 2.2 isolates circulating in China. Vet Microbiol 232:114–120. https://doi.org/10.1016/j.vetmic.2019.04.001. (PMID: 10.1016/j.vetmic.2019.04.00131030834) ; Holland BR, Penny D, Hendy MD (2003) Outgroup misplacement and phylogenetic inaccuracy under a molecular clock—a simulation study. Syst Biol 52(2):229–238. https://doi.org/10.1080/10635150390192771. (PMID: 10.1080/1063515039019277112746148) ; de la Torre-Barcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R (2009) The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data. PLoS One 4(6):e5764. https://doi.org/10.1371/journal.pone.0005764. (PMID: 10.1371/journal.pone.0005764195036182685480)
- Grant Information: 2019k02-63 Xianyang Vocational Technical College (CN)
- Substance Nomenclature: 0 (Viral Envelope Proteins) ; 0 (glycoprotein E2, classical swine fever virus)
- Entry Date(s): Date Created: 20210518 Date Completed: 20210716 Latest Revision: 20221012
- Update Code: 20240513
|
