Comparing Methods to Extract Crop Height and Estimate Crop Coefficient from UAV Imagery Using Structure from Motion

Although it is common to consider crop height in agricultural management, variation in plant height within the field is seldom addressed because it is challenging to assess from discrete field measurements. However, creating spatial crop height models (CHMs) using structure from motion (SfM) applied to unmanned aerial vehicle (UAV) imagery can easily be done. Therefore, looking into intra- and inter-season height variability has the potential to provide regular information for precision management. This study aimed to test different approaches to deriving crop height from CHM and subsequently estimate the crop coefficient (Kc). CHMs were created for three crops (tomato, potato, and cotton) during five growing seasons, in addition to manual height measurements. The Kc time-series were derived from eddy-covariance measurements in commercial fields and estimated from multispectral UAV imagery in small plots, based on known relationships between Kc and spectral vegetation indices. A comparison of four methods (Mean, Sample, Median, and Peak) was performed to derive single height values from CHMs. Linear regression was performed between crop height estimations from CHMs against manual height measurements and Kc. Height was best predicted using the Mean and the Sample methods for all three crops (R2 = 0.94, 0.84, 0.74 and RMSE = 0.056, 0.071, 0.051 for cotton, potato, and tomato, respectively), as was the prediction of Kc (R2 = 0.98, 0.84, 0.8 and RMSE = 0.026, 0.049, 0.023 for cotton, potato, and tomato, respectively). The Median and Peak methods had far less success in predicting both, and the Peak method was shown to be sensitive to the size of the area analyzed. This study shows that CHMs can help growers identify spatial heterogeneity in crop height and estimate the crop coefficient for precision irrigation applications.